Unraveling genetic variations of Dalbergia latifolia (Fabaceae) from Yogyakarta and Lombok Island, Indonesia
##plugins.themes.bootstrap3.article.sidebar##
##plugins.themes.bootstrap3.article.main##
Abstract
Abstract. Yulita KS, Atikah TD, Wardani W, Susila. 2020. Unraveling genetic variations of Dalbergia latifolia (Fabaceae) from Yogyakarta and Lombok Island, Indonesia. Biodiversitas 21: 833-841. Dalbergia latifolia Roxb. (Fabaceae) or sonokeling is a timber species extracted for its beautiful heartwood used mainly for musical instruments. D. latifolia was listed in Appendix 2 of CITES since 1997, and the demand for its timber is increasing. The species is considered vulnerable (VU A1cd ver 2.3) to extinction according to the IUCN Red List, while cultivations were mainly done from a root cutting. To anticipate the further loss of population size while maintaining sustainable use of the species, it is essential to evaluate the genetic diversity since the genetic diversity level could serve as an indicator of plant adaptability to its environment. This present study was the first to report the genetic diversity of five populations of D. latifolia from Yogyakarta and Lombok Island, West Nusa Tenggara, Indonesia. Ten combinations of Sequence Random Amplified Polymorphism (SRAP) primers were used to amplify 48 samples of D. latifolia from five populations in Yogyakarta and Lombok Island. The 137 SRAP loci were used for a cluster, and population genetic analysis, with mean NPL, was of 13.6/locus, PLP of 56.18%, H of 0.16, and PIC for all population was of 0.28. The lowest gene diversity (H = 0.11) was observed in population WL 1 of Lombok Island, while the highest (H = 0.20) was recorded for population KP of Yogyakarta. The Yogyakarta and Lombok populations were genetically structured at a medium level (Gst = 0.27), with low genetic distance (0.0310-0.1281), and a moderate level of variation observed among individual trees (ca. 0.5 coefficient similarity). The results of this present study were expected to provide necessary information on further research of D. latifolia from Indonesia to support the sustainable use of D. latifolia in Indonesia and the preservation of this species.
##plugins.themes.bootstrap3.article.details##
Arisoesilaningsih E, Soejono S. 2015. Diversity of Drought-Resistant Plant and the Benefits of Their Biomass for Improving Fertility of a Degraded Soil of Brantas River Basin. J Degraded & Mining Land Manag 2(2): 313-318
Bakshi M, Sharma A. 2011. Assessment of genetic diversity in Dalbergia sissoo clones through RAPD profiling.
Journal of Forestry Research (2011) 22(3): 393?397. DOI 10.1007/s11676-011-0183-7
Basyuni M, Hamzah, Rahayu S, Siregar UJ. 2012. Effect of anthropogenic activities on genetic variation of Rhizophora mucronata Lamk. in Secanggang Mangrove Forest, North Sumatra. FORESTA 1(2):41-48.
Barrett MA, Brown JL, Morikawa MK, Labat J, Yoder AD. 2010. CITES Designation for endangered rosewood in
Madagascar. Science 328:1109–1110.
Cardoso D, Pennington RT, de Queiroz LP, Boatwright JS, Van Wyk BE, Wojciechowski MF, Lavin M. 2013.
Reconstructing the deep-branching relationships of the papilionoid legumes. South African J Bot 89: 58–75.
Cheng Y, Ma X, Zhou K, Humphreys MW, Zhang XQ. 2016. Phylogenetic analysis of Festuca–Lolium complex
using SRAP markers. Genet Resour Crop Evol (2016) 63:7–18. DOI 10.1007/s10722-015-0324-5
Djajanti D. 2006. Managing Forest with Community (PHBM) in Central Java: Promoting Equity in Access to NTFPs. In: Mahanty S, Fox J, Nurse N, Stephen P, McLees L. (ed.) Hanging the Balance: Equity in Community-Based Nat. Res. Management in Asia. Recoftc & East-West Center. pp 63-82
Hani A, Suryanto P. 2014. Dinamika Agroforestri di Perbukitan Manoreh, Kulon Progo Daerah Istimewa Yogyakarta. J Penelitian Kehutanan Wallacea 3(2): 119-128
Hartl, DL, Clark AG. 1989. Principles of population genetics. 2nd ed. Sinauer Associates, Sunderland,
Massachusetts.
Hassold S, Lowry PP, Bauert MR, Razafintsalama A. 2016. DNA barcoding of Malagasy rosewoods: towards a
molecular identification of CITES-listed dalbergia species. PLoS One 11: e0157881.
Hien VTT, Phong DT. 2012. Genetic diversity among endangered rare Dalbergia cochinchinensis (Fabaceae)
genotypes in Vietnam revealed by random amplified polymorphic DNA (RAPD) and inter simple sequence repeats (ISSR) markers. African Journal of Biotechnology Vol. 11(35), pp. 8632-8644. DOI: 10.5897/AJB11.3598
Karlinasari L, Nawawi DS, Widyani M. 2010. Kajian Sifat Anatomi dan Kimia Kayu Kaitannya dengan Sifat Akustik Kayu. Bionatura 12(3): 110-116
Kovach WL. 2007. MVSP A multivariate statistical package for windows ver 3.1. Kovach Computing Services.
Pentraeth, Wales, UK
Li G, Quiros F 2001 Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple
PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 103: 455-461
Maridi, Agustina P, Saputra A. 2014. Vegetation Analysis of Samin Watershed, Central Java as water and Soil Conservation Efforts. Biodiversitas 15(2): 215-223;
McDermott JM, McDonald BA. 1993. Gene flow in plant pathosystems. Ann.Rev. Phytopathology 31: 353-373.
Mulyana L, Febryano IG, Safe’I R, Banuwa, IS. 2017. Performa Pengelolaan Agroforestri di Wilayah Kesatuan Pengelolaan Hutan Lindung Rajabasa. J. Hutan Tropis 5(2):127-133
Lewontin RC. 1972. The apportionment of human diversity. J Evol Biol 6: 381-398
Li QM, He TH and Xu ZF 2005 Genetic evaluation of the efficacy of in situ and ex situ conservation of Parashorea
chinenis (Dipterocarpaceae) in southwestern China. Biochem Genet 43: 387-406
Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals.
Genetics 89: 583-590.
Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy Sciences
USA 70: 3321- 3323.
Li Q, Wu J, Wang Y, Lian X, Wu F, Zhou L, Huang Z, Zhu S. 2017. The phylogenetic analysis of Dalbergia
(Fabaceae: Papilionaceae) based on different DNA barcodes. 2017. Holzforschung 71(12): 939–949.
http://orcid.org/0000-0002-7674-5565
Riek JD, Calsyn E, Everaert I, Bockstaele EV, Loose MD. 2001. AFLP based alternatives for the assessment of
Distinctness, Uniformity and Stability of sugar beet varieties. Theor Appl Genet 103: 1254±1265.
Robarts DWH, Wolfe AD. 2014. Sequence-Related Amplified Polymorphism (SRAP): A potential resource for
studies in plant molecular biology. Applications in Plant Sciences 2(7): 1400017
Rout GR, Bhatacharya D, Nanda RM, Nayak S, Das P. 2003. Evaluation of genetic relationships in Dalbergia
species using RAPD markers. Biodiversity and Conservation 12: 197–206
Saha S, Shilpi JA, Mondal H, Hossain F, Anisuzzman M, Hasan MM, Cordell GA. 2013. Ethnomedicinal,
phytochemical, and pharmacological profile of the genus Dalbergia L. (Fabaceae). Phytopharmacology 4:291–
346.
Sneath PHA and Sokal RR 1973 Numerical taxonomy — the principles and practice of numerical classification. WH
Freeman: San Francisco.
Stojni? S, Avramidou EA, Fussi B, Westergren M, Orlovi? S, Matovi? B, Trudi´ B, Kraigher H, Aravanopoulos FA, Konnert M. 2019. Assessment of genetic diversity and population genetic structure of norway spruce (Picea abies (L.) Karsten) at its Southern Lineage in Europe. Implications for Conservation of Forest Genetic Resources Forests.10(3): 258. doi: 10.3390/f10030258
Sunarno B. 1996. Systematic Studies of Malesian Dalbergia (Leguminosae). PhD Dissertation. Tohoku University, Japan.
Vatanparast M, Klitgard BB, Adema FACB, Pennington RT, Yahara T, Kajita T. 2013. First molecular
phylogeny of the pantropical genus Dalbergia: implications for infrageneric circumscription and biogeography. South African J. Bot. 89:143–149.
Whitlock MC 2011 GST and D does not replace FST Mol Ecol 20(6): 1083-1091
Yeh FC, Yang R, Boyle T 1999 POPGENE, Microsoft Window-based Freeware for Population Genetic Analysis. Version 1.31, University of Alberta, Edmonton, Canada
Yulita KS, Rahmat HH. 2019. IOP Conf Ser: Earth Environ Sci 308: 012067
Yulita KS and Ridwan. 2018. Molecular characterization of induced mutation of jewawut (Setaria italica ssp.
italica) from Buru Island, Indonesia using SRAP. Biodiversitas 19(3): 1160-1168
Zheng Y, Xu S, Liu J, Zhao Y, Liu J (2017) Genetic diversity and population structure of Chinese natural
bermudagrass [Cynodon dactylon (L.) Pers.] germplasm based on SRAP markers. PLoS ONE 12(5): e0177508. https://doi.org/10.1371/journal.pone.0177508