Screening and molecular identification of lipolytic bacteria from spent bleaching earth
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Abstract. Soleha S, Retnaningrum E. 2020. Screening and molecular identification of lipolytic bacteria from spent bleaching earth. Biodiversitas 21: 4155-4161. Lipolytic bacteria can produce nanobioremediation materials that encourage researchers to explore the diversity of these bacteria. Lipolytic bacteria were isolated from spent bleaching earth (SBE). Bacteria isolates were screened for their lipolytic index and crude lipase activity. Strain with the highest lipolytic index and crude lipase activity were identified using the 16S rRNA gene as genetic markers. The maximum likelihood method in MEGA6 software has been used to analyze the relationship of the isolate. The results showed that strain SBE01 had the highest lipolytic index and crude lipase activity of 8.8 ± 0.7 mm and 5.7 U/mL, respectively. Based on 16S rRNA gene analysis, the isolate was identified as Moraxella sp. Phylogenetic tree was shown that SBE01 isolate was closely related to Moraxella osloensis. Moraxella sp. has the potential to be used as a bioremediation agent from oil-contaminated environment.
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References
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Boesenberg-Smith KA, Pessarakli MM, Wolk DM. 2012. Assessment of DNA yield and purity: an overlooked detail of PCR troubleshooting. Clin Microbiol Newesl 34(1): 1-5.
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Corsi I, Winther-Nielsen M, Sethi R, Punta C, Torre DC, Libralato G, Lofrano G, Sabatini L, Aiello M, Fiordi L, Cinuzzi F, Caneschi A, Pellegrini D, Buttino I. 2018. Ecofriendly nanotechnologies and nanomaterials for environmental applications: Key issue and consensus recommendations for sustainable and ecosafe nanoremediation. Ecotox Environ Safe 154: 237-244.
Danso D, Chow J, Streit WR. 2019. Plastics: environmental and biotechnological perspectives on microbial degradation. Appl Environ Microbiol 85(19): 1-14.
Drancourt M, Bollet C, Carlioz A, Martelin R, Gayral J, Raoult D. 2000. 16S Ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol 38(10): 3623-3630.
Embersa ME, Doyleb LA, Whitehousec CA, Selbyc EB, Chappellc M, Philippa MT. 2011. Characterization of a Moraxella species that causes epistaxis in Macaques. Vet Microbiol 147: 367-375.
Fredriksson NJ , Hermansson M, Wilen B. 2013. The Choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant. Plos One 8(10): 1-20.
Gallacher SR, Desjardin PR. 2006. Quantitation of DNA and RNA with absorption and fluorescence spectroscopy. Current Protocols in Molecular Biology. John Wiley and Sons, Inc. New York
Haywood-Farmer E, Otto SP. 2003. The evolution of genomic base composition in bacteria. Evolution 57(8): 1783-1792.
Kanmani P, Kumaresan K, Aravind J. 2015. Utilization of coconut oil mill waste as a substrate for optimized lipase production, oil biodegradation and enzyme purification studies in Staphylococcus pasteuri. Electron J Biotechnol 18(1): 20-28.
Kheang LS, Foon CS, May CY, Ngan MA. 2006. A study of residual oils recovered from spent bleaching earth: Their characteristics and applications. Am J Appl Sci 3 (10): 2063-2067.
Kumar D, Kumar L, Nagar S, Raina C, Parshad R, Gupta VK. 2012. Screening, isolation and production of lipase/esterase producing Bacillus sp. strain DVL2 and its potential evaluation in esterification and resolution reactions. Arch Appl Sci Res 4(4): 1763-1770.
Lauprasert P, Chansirirattana J, Paengjan J. 2017. Effect of selected bacteria as bioremediation on the degradation of fats oils and greases in wastewater from cafeteria grease traps. Eur J Sustain Dev 6(2):181-186.
Lee LP, Karbul HM, Citartan M, Gopinath SCB, Lakshmipriya T, Tang T. 2015. Lipase-secreting Bacillus species in an oil-contaminated habitat?: Promising strains to alleviate oil pollution. Biomed Res Int 2015: 1-9.
Liu L, Li Y, Yoza BA, Hao K, Li QX, Li Y, Wang Q, Guo S, Chen C. 2020. Magnetic spent bleaching earth carbon (Mag-SBE@C) for efficient adsorption of tetracycline hydrochloride: Response surface methodology for optimization and mechanism of action. Sci Total Environment 722: 137817.
Liu Y, Li J, Wua L, Shi Y, Hea Q, Chen J, Wan D. 2020. A char-clay composite catalyst derived from spent bleaching earth for efficient ozonation of recalcitrants in water. Science 699: 134395.
Loh SK, Cheng SF, Choo YM, Ma AN. 2006. A study of residual oils recovered from spent bleaching earth: their characteristics and applications. Am J Appl Sci 3: 2063-2067.
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Nalobile P, Wachira JM, Thiong'o JK, Marangu JM. 2019. Pyroprocessing and the optimum mix ratio of rice husks, broken bricks and spent bleaching earth to make pozzolanic cement. Heliyon 5: e02443
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Nurhikmayani R, Daryono BS, Retnaningrum E. 2019. Isolation and molecular identification of antimicrobial-producing Lactic Acid Bacteria from chao, South Sulawesi (Indonesia) fermented fish product. Biodiversitas. 20(4): 1063-1068.
Odeyemi AT, Aderiye BI, Bamidele OS. 2013. Lipolytic activity of some strains of Klebsiella, Pseudomonas and Staphylococcus spp. from restaurant wastewater and receiving stream. J Microbiol Res 3(1): 43-52.
Retnaningrum E, Wilopo W. 2017. Production and characterization of biosurfactants produced by Pseudomonas aeruginosa B031 isolated from a hydrocarbon phytoremediation field. Biotropia 25(2): 130-139.
Rizwan M, Singh M, Mitra CK, Morve RK. 2014. Review article: Ecofriendly application of nanomaterials: nanobioremediation. J Nanopart 2014: 1-7.
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Saranya P, Selvi PK, Sekaran G. 2019. Integrated thermophilic enzyme-immobilized reactor and high-rate biological reactors for treatment of palm oil-containing wastewater without sludge production. Bioproc Biosyst Eng 42: 1053-1064.
Sari MA, Retnaningrum, E. 2019. Hydrocarbon degradation by bacteria from rhizospheres of Imperata cylindrica at oil mining site in Wonocolo, Bojonegoro, Indonesia. Biodiversitas 20(11): 3422-3429.
Sedghamiz MA, Attar F, Raeissi S. 2019. Experimental investigation of acid regeneration of spent bleaching clay de-oiled by the in-situ trans esterification process at various operating conditions. Process Saf Environ 124: 121-127.
Senthilraj R, Prasad GS, Janakiraman K. 2016. Sequence-based Identification of Microbial Contaminants in Non parenteral Products. Braz J Pharm Sci 52(2): 329-335.
Syahir AZ, Zulkifli NWM, Masjuki HH, Kalam MA, Alabdulkarem A, Gulzar M, Khuong LS, Harith MH. 2017. A review on bio-based lubricants and their applications. J Clea Prod 168: 997-1016.
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 30(12): 2725-2729.
Tripathi R, Singh J, Bharti RK, Thakur IS. 2014. Isolation, purification and characterization of lipase from Microbacterium sp. and its application in biodiesel production. Energy Procedia 54: 518-529.
Urbanek AK, Rymowicz W, Aleksandra M. Miro?czuk AM. 2018. Degradation of plastics and plastic-degrading bacteria in cold marine habitats. Appl Microbiol Biotechnol 102(18): 7669-7678
Veerapagu M, Narayanan DRAS, Ponmurugan K, Jeya KR. 2013. Screening selection sdentification production and optimization of bacterial lipase from oil spilled soil. Asian J Pharm Clin Res 6(3): 62-67.
Wang L, Liu T, Sun H, Zhou O. 2018. Transesterification of para-hydroxybenzoic acid esters (parabens) in the activated sludge. J Hazard Mater 354: 145-152.
Xia M, Fu D, Chakraborty R, Singh RP, Terry N. 2019. Enhanced crude oil depletion by constructed bacterial consortium comprising bioemulsifier producer and petroleum hydrocarbon degraders. Bioresour Technol 282: 456-463.
Xu L, Chen S, Song H, Liu Y, Shi C, Lu Q. 2020. Comprehensively utilization of spent bleaching clay for producing high quality bio-fuel via fast pyrolysis process. Energy 190: 116371.
Benget VV, Retnaningrum E. Activities and molecular characterization of petroleum hydrocarbons degrading rhizobacteria from mangrove plants (Rhizophora sp.) in Kulon Progo, Yogyakarta, Indonesia. Biodiversitas 21(1): 21-27.
Beshara A, Cheeseman CR. 2014. Reuse of spent bleaching earth by polymerisation of residual organics. Waste Manage 34: 1770-1774.
Boesenberg-Smith KA, Pessarakli MM, Wolk DM. 2012. Assessment of DNA yield and purity: an overlooked detail of PCR troubleshooting. Clin Microbiol Newesl 34(1): 1-5.
Brenner DJ, Krieg NR, Staley JR. 2005. Bergey’s Manual Systematic Bacteriology, Volume 2: The Proteobacteria, New York, Springer.
Chary PS, Devi YP. 2018. Isolation, partial purification and characterization of lipase enzyme from Pseudomonas aeruginosa from soil and sewage waste. Asian J Biol 6(2): 1-6.
Corsi I, Winther-Nielsen M, Sethi R, Punta C, Torre DC, Libralato G, Lofrano G, Sabatini L, Aiello M, Fiordi L, Cinuzzi F, Caneschi A, Pellegrini D, Buttino I. 2018. Ecofriendly nanotechnologies and nanomaterials for environmental applications: Key issue and consensus recommendations for sustainable and ecosafe nanoremediation. Ecotox Environ Safe 154: 237-244.
Danso D, Chow J, Streit WR. 2019. Plastics: environmental and biotechnological perspectives on microbial degradation. Appl Environ Microbiol 85(19): 1-14.
Drancourt M, Bollet C, Carlioz A, Martelin R, Gayral J, Raoult D. 2000. 16S Ribosomal DNA sequence analysis of a large collection of environmental and clinical unidentifiable bacterial isolates. J Clin Microbiol 38(10): 3623-3630.
Embersa ME, Doyleb LA, Whitehousec CA, Selbyc EB, Chappellc M, Philippa MT. 2011. Characterization of a Moraxella species that causes epistaxis in Macaques. Vet Microbiol 147: 367-375.
Fredriksson NJ , Hermansson M, Wilen B. 2013. The Choice of PCR primers has great impact on assessments of bacterial community diversity and dynamics in a wastewater treatment plant. Plos One 8(10): 1-20.
Gallacher SR, Desjardin PR. 2006. Quantitation of DNA and RNA with absorption and fluorescence spectroscopy. Current Protocols in Molecular Biology. John Wiley and Sons, Inc. New York
Haywood-Farmer E, Otto SP. 2003. The evolution of genomic base composition in bacteria. Evolution 57(8): 1783-1792.
Kanmani P, Kumaresan K, Aravind J. 2015. Utilization of coconut oil mill waste as a substrate for optimized lipase production, oil biodegradation and enzyme purification studies in Staphylococcus pasteuri. Electron J Biotechnol 18(1): 20-28.
Kheang LS, Foon CS, May CY, Ngan MA. 2006. A study of residual oils recovered from spent bleaching earth: Their characteristics and applications. Am J Appl Sci 3 (10): 2063-2067.
Kumar D, Kumar L, Nagar S, Raina C, Parshad R, Gupta VK. 2012. Screening, isolation and production of lipase/esterase producing Bacillus sp. strain DVL2 and its potential evaluation in esterification and resolution reactions. Arch Appl Sci Res 4(4): 1763-1770.
Lauprasert P, Chansirirattana J, Paengjan J. 2017. Effect of selected bacteria as bioremediation on the degradation of fats oils and greases in wastewater from cafeteria grease traps. Eur J Sustain Dev 6(2):181-186.
Lee LP, Karbul HM, Citartan M, Gopinath SCB, Lakshmipriya T, Tang T. 2015. Lipase-secreting Bacillus species in an oil-contaminated habitat?: Promising strains to alleviate oil pollution. Biomed Res Int 2015: 1-9.
Liu L, Li Y, Yoza BA, Hao K, Li QX, Li Y, Wang Q, Guo S, Chen C. 2020. Magnetic spent bleaching earth carbon (Mag-SBE@C) for efficient adsorption of tetracycline hydrochloride: Response surface methodology for optimization and mechanism of action. Sci Total Environment 722: 137817.
Liu Y, Li J, Wua L, Shi Y, Hea Q, Chen J, Wan D. 2020. A char-clay composite catalyst derived from spent bleaching earth for efficient ozonation of recalcitrants in water. Science 699: 134395.
Loh SK, Cheng SF, Choo YM, Ma AN. 2006. A study of residual oils recovered from spent bleaching earth: their characteristics and applications. Am J Appl Sci 3: 2063-2067.
Loh SK, Cheong KY, Salimon J. 2017. Surface-active physicochemical characteristics of spent bleaching earth on soil-plant interaction and water-nutrient uptake: A review. Appl Clay Sci 140: 59-65.
Nalobile P, Wachira JM, Thiong'o JK, Marangu JM. 2019. Pyroprocessing and the optimum mix ratio of rice husks, broken bricks and spent bleaching earth to make pozzolanic cement. Heliyon 5: e02443
Narayanan S. 2014. Isolation and identification of a novel lipase producing bacteria from oil spilled soil. Int J Innov Res Sci Eng Technol 3(12): 18122-18129.
Nurhikmayani R, Daryono BS, Retnaningrum E. 2019. Isolation and molecular identification of antimicrobial-producing Lactic Acid Bacteria from chao, South Sulawesi (Indonesia) fermented fish product. Biodiversitas. 20(4): 1063-1068.
Odeyemi AT, Aderiye BI, Bamidele OS. 2013. Lipolytic activity of some strains of Klebsiella, Pseudomonas and Staphylococcus spp. from restaurant wastewater and receiving stream. J Microbiol Res 3(1): 43-52.
Retnaningrum E, Wilopo W. 2017. Production and characterization of biosurfactants produced by Pseudomonas aeruginosa B031 isolated from a hydrocarbon phytoremediation field. Biotropia 25(2): 130-139.
Rizwan M, Singh M, Mitra CK, Morve RK. 2014. Review article: Ecofriendly application of nanomaterials: nanobioremediation. J Nanopart 2014: 1-7.
Sambrook J, Russell D. 2001. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
Saranya P, Selvi PK, Sekaran G. 2019. Integrated thermophilic enzyme-immobilized reactor and high-rate biological reactors for treatment of palm oil-containing wastewater without sludge production. Bioproc Biosyst Eng 42: 1053-1064.
Sari MA, Retnaningrum, E. 2019. Hydrocarbon degradation by bacteria from rhizospheres of Imperata cylindrica at oil mining site in Wonocolo, Bojonegoro, Indonesia. Biodiversitas 20(11): 3422-3429.
Sedghamiz MA, Attar F, Raeissi S. 2019. Experimental investigation of acid regeneration of spent bleaching clay de-oiled by the in-situ trans esterification process at various operating conditions. Process Saf Environ 124: 121-127.
Senthilraj R, Prasad GS, Janakiraman K. 2016. Sequence-based Identification of Microbial Contaminants in Non parenteral Products. Braz J Pharm Sci 52(2): 329-335.
Syahir AZ, Zulkifli NWM, Masjuki HH, Kalam MA, Alabdulkarem A, Gulzar M, Khuong LS, Harith MH. 2017. A review on bio-based lubricants and their applications. J Clea Prod 168: 997-1016.
Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. 2013. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 30(12): 2725-2729.
Tripathi R, Singh J, Bharti RK, Thakur IS. 2014. Isolation, purification and characterization of lipase from Microbacterium sp. and its application in biodiesel production. Energy Procedia 54: 518-529.
Urbanek AK, Rymowicz W, Aleksandra M. Miro?czuk AM. 2018. Degradation of plastics and plastic-degrading bacteria in cold marine habitats. Appl Microbiol Biotechnol 102(18): 7669-7678
Veerapagu M, Narayanan DRAS, Ponmurugan K, Jeya KR. 2013. Screening selection sdentification production and optimization of bacterial lipase from oil spilled soil. Asian J Pharm Clin Res 6(3): 62-67.
Wang L, Liu T, Sun H, Zhou O. 2018. Transesterification of para-hydroxybenzoic acid esters (parabens) in the activated sludge. J Hazard Mater 354: 145-152.
Xia M, Fu D, Chakraborty R, Singh RP, Terry N. 2019. Enhanced crude oil depletion by constructed bacterial consortium comprising bioemulsifier producer and petroleum hydrocarbon degraders. Bioresour Technol 282: 456-463.
Xu L, Chen S, Song H, Liu Y, Shi C, Lu Q. 2020. Comprehensively utilization of spent bleaching clay for producing high quality bio-fuel via fast pyrolysis process. Energy 190: 116371.
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