Genetic diversity and morphological characteristics of native seashore paspalum in Indonesia
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Abstract
Abstract. Rahayu, Fatimah, Bae EJ, Mo YG, Choi JS. 2020. Genetic diversity and morphological characteristics of native seashore paspalum in Indonesia. Biodiversitas 21: 4981-4989. Seashore paspalum (Paspalum vaginatum) is a warm-season turfgrass indigenous to tropical and coastal areas worldwide. The objectives of this study were to measure the genetic diversity and genetic variation of Indonesian seashore paspalum germplasm. Three turf quality, six morphological characters, and ten SSR (microsatellite) markers were used to assess genetic relationships and genetic variation among 22 germplasm resources from Indonesia and one commercial variety (Salam) from United States of America. The results showed significant variation for five morphological characters among 23 tested seashore paspalum accessions. The cluster analysis of morphological characters of 23 seashore paspalum accessions using 0,6 cut off divided into three morphological types: tall high-density, intermediate, and dwarf low-density ecotype. The genetic variation revealed 22 alleles with average number of alleles per locus was 2 and polymorphism information content (PIC) values average was 0.33. The microsatellite marker cluster analysis showed that 23 seashore paspalum accessions were grouped into two major groups, with a genetic similarity coefficient was 0,72. The low level of genetic diversity occurred among Indonesia natural grass germplasm and the genetic distance was relatively low between Indonesian germplasm and Salam variety. The genetic diversity and morphological characteristics will be useful for further study and utilization of Indonesian seashore paspalum germplasm.
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Brosnan JT, Deputy J. 2008. Seashore Paspalum. Univ. Hawaii. Manoa, Coop. Ext. Serv. TM-1. Turf Management 1: 1-8.
Chen ZB, Wang ML, Waltz C, Raymer PL. 2009. Genetic diversity of warm-season turfgrass: Seashore paspalum, bermudagrass, and zoysiagrass revealed by AFLPs. Floricult. Ornam. Biotechnol. 3:20–24.
Dellaporta SL, Wood J, Hicks JB. 1983. A plant DNA minipreparation: version II. Plant Mol. Biol. Rep. 1: 19-21.
Emmons RD. 2000. Turfgrass science and management. 3rd ed. Delmar Publishers, NY, USA. p. 528.
Gaetani M, Volterrani M, Magni S, Caturegli L, Minelli A, Leto C, La Bella S, Tuttolomondo T, Virga G, Grossi N. 2017. Seashore paspalum in the mediterranean transition zone: phenotypic traits of twelve accessions during and after establishment. Italian Journal of Agronomy. 12:808. DOI: 10.4081/ija.2017.808
Hafid HH,Darwis, Jaya M. 2007. Penggunaan pupuk kandang pada padang rumput di lahan kering Sulawesi Tenggara. Media Peternakan. 30(3):156-162.
Hatami FR. 2017. Visual and functional quality of seashore paspalum (Paspalum vaginatum) native indonesia with sand mixture on vertisols. [Thesis]. Sebelas Maret University. Surakarta. [Indonesian].
Jia XP, Deng YM, Sun XB, Liang LJ, Ye XQ. 2015. Characterization of the global transcriptome using Illumina sequencing and novel microsatellite marker information in seashore paspalum. Genes Genomics 37:77–86.
Kim KS, Yeo JS, Choi CB. 2002. Genetic diversity of north-east Asian cattle based on microsatellite data. Animal Genetics 33(3): 201-204.
Kuswara AA. 2018. Kecernaan bahan kering (bk) dan bahan organik (bo) regrowth rumput Paspalum dilatatum dengan pemupukan organik pada tanah regosol. [Thesis]. Mataram University, Mataram. [Indonesian].
Li HY, Wang XS, Wang YP, Wu Y, Shen Q, Jia XP. 2016. Analysis of SSR information in EST resources and development of ESTSSR marker in Paspalum vaginatum. Chin. Agr. Sci. Bull. 32:96–102.
Liu, Z.W., R.L. Jarret, R.R. Duncan, and S. Kresovich. 1994. Genetic relationships and variation among ecotypes of seashore paspalum (Paspalum vaginatum) determined by random amplified polymorphic DNA markers. Genome 37:1011–1017.
Liu K, Muse S. 2004. PowerMarker: new genetic data analysis software. Version 3.0. http://www.powermarker.net.
Liu Y, Guo H, Wang Y, Shi J, Li D, Wang Z, Liu J. 2019. Measurement of genetic diversity of Chinese seashore paspalum resources through morphological and sequence-related amplified polymorphism analysis J. Amer. Soc. Hort. Sci. 144(6):379–386. https://doi.org/10.21273/JASHS04700-19.
Nurhayu A, Saenab A. 2019. Pertumbuhan, produksi dan kandungan nutrisi hijauan unggul pada tingkat naungan yang berbeda (Growth, production and content of superior forage nutrients at different shade levels). Jurnal Agripet (19)1: 40-50.
Poetri E. 2018. Evaluasi produksi dan nilai nutrisi beberapa jenis rumput paspalum sp yang dipupuk dengan mikroba arbuskula sebagai pakan rusa. [Dissertation]. University of Brawijaya. Malang. [Indonesian].
Qi P, Eudy D, Schnable JC, Schmutz J, Raymer PL, Devos KM. 2019. High density genetic maps of seashore paspalum using genotyping-by-sequencing and their relationship to the sorghum bicolor genome. Scientific Reports. 9:12183. https://doi.org/10.1038/s41598-019-48257-3.
Rahayu, Zuamah H, Yang GM, Choi JS. 2014. Growth of zoysiagrass and seashore paspalum on volcano eruption and and clayey soil with organic and inorganic fertilizers in Indonesia. Weed Turf. Sci. 3(3):240~245. http://dx.doi.org/10.5660/WTS.2014.3.3.240.
Rohlf FJ. 2005. NTSYS-pc: numerical taxonomy and multivariate analysis system, version 2.2. Exeter Software: Setauket, NY.38p.Dc.
Shen Q, Bian H, Wei HY, Liao L, Luo XY, Ding XP, Raymer P. 2020. Genetic diversity of seashore paspalum revealed with simple sequence repeat markers. J. Amer. Soc. Hort. Sci. 145(4):228–235 https://doi.org/10.21273/JASHS04860-19.
Shultz KH, Raymer P, Scheffler BE, Arias RS. 2013. Development and Characterization of Seashore Paspalum SSR Markers. Crop Science 53:1-7. doi: 10.2135/cropsci2012.11.0671.
Zinn S. 2004. Deep roots, dwarf habit, salinity tolerance: ‘SeaDwarf’ paspalum looks promising. Florida Turf Digest. March/April: 24–25.
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