Biodiversity of Escherichia coli bacterial resistance to multidrug isolated on the Dumai coast of Indonesia

##plugins.themes.bootstrap3.article.main##

FELI FELIATRA
MARDALISA MARDALISA
IRWAN EFFENDI
ADELINA ADELINA
VANESA ADIBA FELIATRA

Abstract

Abstract. Feliatra F, Mardalisa M, Efendi I, Adelina A, Feliatra VA. 2021. Biodiversity of Escherichia coli bacterial resistance to multidrug isolated on the Dumai coast of Indonesia. Biodiversitas 23: 10-16. Anthropogenic pollution around the Dumai coast of Indonesia disturbs marine microorganisms, including commensal bacteria such as fecal Escherichia coli. Escherichia coli have often been used as a sensitive indicator for the spread of Antibiotic Resistance Genes (ARGs) among pathogens. This study aimed to analyze the development of E. coli resistance, originating from the Dumai sea waters using six antibiotics against seven E. coli isolates (E1, E4, E6, E8, E11, E13, and E15) at the five stations. Furthermore, a sensitivity test was performed on Mueller Hinton Agar (MHA) solid media, based on the Kirby-Bauer disk diffusion method. The results showed 100% E. coli isolates resistant to narrow-spectrum antibiotics (Penicillin, Isoniazid, Streptomycin, and Erythromycin) at the five stations. Meanwhile, high resistance of E. coli against the broad-spectrum antibiotics was observed in station 4 (mangrove habitat) existed in Chloramphenicol, whilst no resistance was found in Ciprofloxacin. Escherichia coli isolates showed Multidrug Resistant (MDR) index value higher than 0.2 which suggests there is a high-risk of antibiotics pollution in Dumai seawater. Bioinformatics analysis of 16S rRNA gene sequences represents the identity of E. coli isolates at the species level (97.84% - 99.74%). This study revealed the presence of antibiotic pollution in Dumai seawater which may impact public health. Hence, the local community must be discipline about the use of antibiotics freely.

##plugins.themes.bootstrap3.article.details##

References
Ab Rahman N, Khan Chowdhury AJ, Abidin Z, Azira Z. 2015. Antibiotic resistant bacteria from sediment of coastal water of Pahang, Malaysia. Jurnal Teknologi 77:65-70.
Ain H, Septian F. 2015. Perilaku Masyarakat Tentang Penggunaan Antibiotika Oral. Medica Majapahit 7:79-90.
Al-Bahry S, Mahmoud I, Al-Belushi K, Elshafie A, Al-Harthy A, Bakheit C. 2009. Coastal sewage discharge and its impact on fish with reference to antibiotic resistant enteric bacteria and enteric pathogens as bio-indicators of pollution. Chemosphere 77:1534-1539.
Al-Bahry SN, Al-Mashani BM, Elshafie AE, Pathare N, Al-Harthy AH. 2006. Plasmid profile of antibiotic resistant Escherichia coli isolated from chicken intestines. Journal of Alabama Academy of Sciences 77:152-159.
Cappuccino JG, Sherman N. 2005. Microbiology: a laboratory manual: Pearson/Benjamin Cummings San Francisco.
Chohan ZH, Supuran CT, Scozzafava A. 2005. Metal binding and antibacterial activity of ciprofloxacin complexes. Journal of Enzyme Inhibition and Medicinal Chemistry 20:303-307.
Devarajan N, Laffite A, Mulaji CK, Otamonga J-P, Mpiana PT, Mubedi JI, Prabakar K, Ibelings BW, Poté J. 2016. Occurrence of antibiotic resistance genes and bacterial markers in a tropical river receiving hospital and urban wastewaters. PloS one 11:1-14.
Dhakyanaika K, Kumara P. 2010. Effects of pollution in River Krishni on hand pump water quality. Journal of Engineering Science & Technology Review 3.
Effendi I, Feliatra F, Emrinelson T, Siregar I A and Adelina A. 2021. Effect of heterotrophic bacteria on the growth of tilapia (Oreochromis niloticus) cultivated in brackish water. IOP Conf. Series: Earth and Environmental Science 744 (2021) 012016. IOP Publishing doi:10.1088/1755-1315/744/1/012016.
Feliatra F, Mardalisa M, Setiadi J, Lukistyowaty I, Hutasoit AY. 2020. Potential of Secondary Metabolite from Marine Heterotrophic Bacteria against Pathogenic Bacteria in Aquaculture. In Journal of Physics: Conference Series (Vol. 1655, No.1, p. 012044). IOP Publishing.
Goossens H, Ferech M, Vander Stichele R, Elseviers M, Group EP. 2005. Outpatient antibiotic use in Europe and association with resistance: a cross-national database study. The Lancet 365:579-587.
Hecht DW, Citron DM, Cox M, Jacobus N, Jenkins S, Onderdonk A, Roe-Carpenter D, Rosenblatt J, Wexler H. 2007. Methods for Antimicrobial Susceptibiluty Testing of Anaerobic Bacteria: Approved Standard: Clinical and Laboratory Standards Institute Wayne, PA.
Hidup KL. 2004. Pedoman Penetapan Baku Mutu Lingkungan. In: Jakarta:Kantor Menteri Negara Kependudukan Lingkungan Hidup. Keputusan Menteri Negara Kependudukan dan Lingkungan Hidup. Kep-51/MNLH.
Islam MS, Tanaka M. 2004. Impacts of pollution on coastal and marine ecosystems including coastal and marine fisheries and approach for management: a review and synthesis. Marine pollution bulletin 48:624-649.
Javid P, Shahabadi HZ, Amirkhani H, Amrollahi N, Ranjbar MS. 2020. Isolation and identification of halophilic and halotolerant bacteria from the sediments of the Qeshm Island mangrove forest. Advances in Oceanography and Limnology 11.
Joseph A, Odimayo M, Olokoba L, Olokoba A, Popoola G. 2017. Multiple antibiotic resistance iIndex of EscherichiaColi isolates in a tertiary hospital in south-west Nigeria. Medical Journal of Zambia 44:225-232.
Kian GY, Chui WB, Choon WL. 2012. Antimicrobial resistance in bacteria isolated from tropical coastal waters of Peninsular Malaysia. MJS 31:111-120.
Kim M, Oh H-S, Park S-C, Chun J. 2014. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. International journal of systematic and evolutionary microbiology 64:346-351.
Klein EY, Van Boeckel TP, Martinez EM, Pant S, Gandra S, Levin SA, Goossens H, Laxminarayan R. 2018. Global increase and geographic convergence in antibiotic consumption between 2000 and 2015. Proceedings of the National Academy of Sciences 115:E3463-E3470.
Krisnaningsih MF, Asmara W, Wibowo MH. 2005. Uji Sensitivitas Isolat Escherichia Coli Patogen pada Ayam terhadap Beberapa Jenis Antibiotik. Jurnal Sain Veteriner 23.
Lane D. 1991. 16S/23S rRNA sequencing In Nucleic Acid Techniques in Bacterial Systematics. Stackebrandt E., editor;, and Goodfellow M., editor: Chichester, UK: John Wiley & Sons.
Lukistyowati I, Feliatra F, Nursyiwarni N, Qoriman A, Leksnono T, Mulyadi A. 2019. Microbiological quality (pathogen E. coli bacteria) in the coastal environment of Dumai City, Riau Province. In: IOP Conference Series: Earth and Environmental Science: IOP Publishing. p 012009.
Malendes MA, Bunyamin H. 2017. Analisa Perbandingan dan Implementasi Algoritma DNA Pairwise Sequence Alignment Needleman-Wunsch dan Lempel-Ziv. Jurnal Teknik Informatika dan Sistem Informasi 3.
Manivasagan P, Rajaram G, Ramesh S, Ashokkumar S, Damotharan P. 2011. Occurrence and seasonal distribution of antibiotic resistance heterotrophic bacteria and physico-chemical characteristics of Muthupettai mangrove environment, southeast coast of India. Journal of Environmental Science and Technology 4:139-149.
Mardalisa M, Suhandono S, Ramdhani M. 2020. Isolation and Characterization of str Promoter from Bacteria Escherichia coli DH5? using Reporter Gene AmilCP (Acropora millepora). In IOP Conference Series: Earth and Environmental Science (Vol. 430, No.1, p.012014). IOP Publishing.
Mardalisa M., Feliatra F, Nursyirwani N. 2021. Multiple Antibiotic Resistance Index of Escherichia coli isolates from Dumai Sea Waters Riau Province. Berkala Perikanan Terubuk, 49(1), pp. 734-739.
Marflitt A, Sandle T. 2017. Evaluation of Readycult® Coliforms 100 Presence/Absence Test for the screening of coliforms and Escherichia coli in pharmaceutical water samples. European Journal of Parenteral and Pharmaceutical Sciences 22:118-125.
Massol-Deya A, Weller R, Rios-Hernandez L, Zhou J, Hickey R, Tiedje J. 1997. Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater. Applied and Environmental Microbiology 63:270-276.
Nikaido H. 2009. Multidrug resistance in bacteria. Annual review of biochemistry 78:119-146.
Nordström K, Austin SJ. 1989. Mechanisms that contribute to the stable segregation of plasmids. Annual review of genetics 23:37-69.
Nursyirwani N , Feliatra F , Tanjung A and Harjun F.2020. Isolation of Cellulolytic Bacteria from Mangrove Sediment in Dumai Marine Station Riau and the Antibacterial Activity against Pathogens. IOP Conf. Series: Earth and Environmental Science 430 (2020) 012012 IOP Publishing doi:10.1088/1755-1315/430/1/012012.
Patel JB, Tenover FC, Turnidge JD, Jorgensen JH. 2011. Susceptibility test methods: dilution and disk diffusion methods. In: Manual of Clinical Microbiology, 10th Edition: American Society of Microbiology. p 1122-1143.
Pearson WR. 2013. An introduction to sequence similarity (“homology”) searching. Current protocols in bioinformatics 42:3.1.1-3.1.8.
Permenkes R. 2015. Program Pengendalian Resistensi Antimikroba di Rumah Sakit. In: Jakarta: Menteri Kesehatan Republik Indonesia.
Phares CA, Danquah A, Atiah K, Agyei FK, Michael O-T. 2020. Antibiotics utilization and farmers’ knowledge of its effects on soil ecosystem in the coastal drylands of Ghana. PloS one 15:e0228777.
Prejit NE, Latha C. 2007. Microbial Quality Assurance of Milk During Production, Processing, and Marketing. American Journal of Food Technology 2:136-144.
Rompré A, Servais P, Baudart J, De-Roubin M-R, Laurent P. 2002. Detection and enumeration of coliforms in drinking water: current methods and emerging approaches. Journal of microbiological methods 49:31-54.
santé Omdl, Organization WH, programme W--W, Staff WHO, Zdrowia ?O, WHO. 2004. Guidelines for drinking-water quality: World Health Organization.
Senbadejo TY. 2017. Antibiotic Susceptibility Patterns of Pseudomonas Species Isolated From Clinical and Environmental Samples in Awba Dam, Ibadan. Fountain Journal of Natural and Applied Sciences 6.
Setiaji J, Feliatra F, Teruna HY et al. Antibacterial activity in secondary metabolite extracts of heterotrophic bacteria against Vibrio alginolyticus, Aeromonas hydrophila, and Pseudomonas aeruginosa [version 1; peer review: 2 approved] F1000Research 2020, 9:1491 https://doi.org/10.12688/f1000research.26215.1
Silver L, Chandler M, de la Tour EB, Caro L. 1977. Origin and direction of replication of the drug resistance plasmid R100. 1 and of a resistance transfer factor derivative in synchronized cultures. Journal of bacteriology 131:929-942.
Singh AK, Das S, Singh S, Gajamer VR, Pradhan N, Lepcha YD, Tiwari HK. 2018. Prevalence of antibiotic resistance in commensal Escherichia coli among the children in rural hill communities of Northeast India. PloS one 13:1-15.
Singh AK, Das S, Singh S, Pradhan N, Gajamer VR, Kumar S, Lepcha YD, Tiwari HK. 2019. Physicochemical Parameters and Alarming Coliform Count of the Potable Water of Eastern Himalayan State Sikkim: An Indication of Severe Fecal Contamination and Immediate Health Risk. Frontiers in public health 7..
Suzuki MT, Giovannoni SJ. 1996. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Applied and environmental microbiology 62:625-630.
Tururaja T, Mogea R. 2010. Bakteri Coliform di Perairan Teluk Doreri, Manokwari Aspek Pencemaran Laut dan Identikasi Species. ILMU KELAUTAN: Indonesian Journal of Marine Sciences 15:47-52.
Vila J, Pal T. 2010. Update on antibacterial resistance in low-income countries: factors favoring the emergence of resistance. The Open Infectious Diseases Journal 4:38-54.
Wayne P. 2010. Clinical and Laboratory Standards Institute: Performance standards for antimicrobial susceptibility testing: 20th informational supplement. CLSI document M100-S20.
Zhang YB, Li Y, Sun XL. 2011. Antibiotic resistance of bacteria isolated from shrimp hatcheries and cultural ponds on Donghai Island, China. Marine pollution bulletin 62:2299-2307.
Zhao H, Li Q, Tao J. 2014. Spatio-temporal patterns and source identification of surface water pollution in Bohai Bay, China from 1995 to 2005. World Journal of Engineering 11:605-612.